edikt2 workshop - 2007-12-04
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13:30 Welcome - T M Sloan
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- SFC Report outcome
- Thank all for efforts
"We are pleased that progress is going well.
I am pleased to confirm that the report is acceptable to
us and the report satisfies the SRDG conditions of grant."
- welcome Jan
- edikt 2008 symposium - Wed April 9th in NeSC
13:35 Data Standards for High-Throughput RNA Interference
Experiments
- Dr. Javier Santoyo-Lopez (DPM)
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RNAi - allows you to suppress a gene in experiments
- no longer need transgenic animals
potentially can have plants that will suppress genes in
pest insects and stop them proliferating
28 worldwide centres are part of the RNA Global consortium
Consortium Informatics group make software tools to allow
compare, share data.
MIAME minimum information for microarray experiments took
10yrs to establish
New standards try to reuse/learn from previous experiments
MIBBI - for biological and biomedical investigations
FUGE
- is it a square peg/round hole solution
1415 Rapid Development Tool for Job Submission Portlets
- Dr. Jano van Hemert (NeSC)
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OMII - funds the staff on this project, Jano funded by
edikt2
What NeSC does.
Showed various portals that do not have easy solutions for
non-expert users. Says nano-CMOS is good but took 10 months
to build.
Using Gridsphere/GridSAM
1 XML file to build a portal
demo
FindBugs - finds bugs in Java software
1530 The EaStCHEM Grid: First Iteration
- Dr. Andrew Turner (School of Chemistry)
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- want to work both with pre-WS and WS GT
- people want to be able to look at the job output
while it is running. This abilkity is not well-served
by grid technology.
- uses RSL and Perl
- certificate issues with users
- how much usage
. 1 grid user
1615 Discussions and Wrap-up
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- collaborative, software development environment for the
University of Edinburgh (T M Sloan)
- reference edikt in papers please
